Update the fedora manifest template to F41. This is a preparation for
testing a new `org.osbuild.dnf5.sbom.spdx` stage. In addition to that,
F39 is already EOL and unsupported, so moving to a newer version is
desirable.
Regenerate all testing manifests.
Notes about specific changes:
- Remove `pcmciautils` package from ostree manifest, because it has
been deprecated and it is not available on F41 any more.
- Add `python3-dnf` package to the Fedora build pipeline. The reason
is that DNF5 is installed by default since F41 and the module is
needed to test e.g. `org.osbuild.dnf4.sbom.spdx` or
`org.osbuild.dnf4.mark` stages.
- Add `python3-libdnf5` package to the Fedora build pipeline. This is a
preparation for testing a new `org.osbuild.dnf5.sbom.spdx` stage.
- Install `pam` in `authselect` stage test manifest, because otherwise
authselect fails on the nonexistence of /etc/pam.d.
- Adjust the `dnf4.mark` test case to also accept `dnf5` as the marked
package, because on F41, `dnf` is a virtual provide of it.
- Adjust stage tests and their diffs as needed.
Signed-off-by: Tomáš Hozza <thozza@redhat.com>