Respect extra options in a few codeql calls

lib/codeql.js

@@ -512,7 +512,12 @@ async function getCodeQLForCmd(cmd, checkVersion) {
             await (0, toolrunner_error_catcher_1.toolrunnerErrorCatcher)(cmd, args, error_matcher_1.errorMatchers);
         },
         async resolveLanguages() {
-            const codeqlArgs = ["resolve", "languages", "--format=json"];
+            const codeqlArgs = [
+                "resolve",
+                "languages",
+                "--format=json",
+                ...getExtraOptionsFromEnv(["resolve", "languages"]),
+            ];
             const output = await runTool(cmd, codeqlArgs);
             try {
                 return JSON.parse(output);
@@ -635,6 +640,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                 "cleanup",
                 databasePath,
                 `--mode=${cleanupLevel}`,
+                ...getExtraOptionsFromEnv(["database", "cleanup"]),
             ];
             await runTool(cmd, codeqlArgs);
         },
@@ -645,6 +651,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                 databasePath,
                 `--output=${outputFilePath}`,
                 `--name=${databaseName}`,
+                ...getExtraOptionsFromEnv(["database", "bundle"]),
             ];
             await new toolrunner.ToolRunner(cmd, args).exec();
         },