diff --git a/lib/codeql.test.js b/lib/codeql.test.js
index 87293c562..861a0afcd 100644
--- a/lib/codeql.test.js
+++ b/lib/codeql.test.js
@@ -27,7 +27,7 @@ ava_1.default('download codeql bundle cache', async (t) => {
             nock_1.default('https://example.com')
                 .get(`/download/codeql-bundle-${version}/codeql-bundle.tar.gz`)
                 .replyWithFile(200, path.join(__dirname, `/../src/testdata/codeql-bundle.tar.gz`));
-            await codeql.setupCodeQL(`https://example.com/download/codeql-bundle-${version}/codeql-bundle.tar.gz`, 'token', 'https://github.example.com', tmpDir, tmpDir, 'runner', logging_1.getRunnerLogger());
+            await codeql.setupCodeQL(`https://example.com/download/codeql-bundle-${version}/codeql-bundle.tar.gz`, 'token', 'https://github.example.com', tmpDir, tmpDir, 'runner', logging_1.getRunnerLogger(true));
             t.assert(toolcache.find('CodeQL', `0.0.0-${version}`));
         }
         const cachedVersions = toolcache.findAllVersions('CodeQL');
@@ -46,7 +46,7 @@ ava_1.default('parse codeql bundle url version', t => {
     for (const [version, expectedVersion] of Object.entries(tests)) {
         const url = `https://github.com/.../codeql-bundle-${version}/...`;
         try {
-            const parsedVersion = codeql.getCodeQLURLVersion(url, logging_1.getRunnerLogger());
+            const parsedVersion = codeql.getCodeQLURLVersion(url, logging_1.getRunnerLogger(true));
             t.deepEqual(parsedVersion, expectedVersion);
         }
         catch (e) {
diff --git a/lib/codeql.test.js.map b/lib/codeql.test.js.map
index bb077a99b..fd4f82665 100644
--- a/lib/codeql.test.js.map
+++ b/lib/codeql.test.js.map
@@ -1 +1 @@
-{"version":3,"file":"codeql.test.js","sourceRoot":"","sources":["../src/codeql.test.ts"],"names":[],"mappings":";;;;;;;;;;;;AAAA,+DAAiD;AACjD,8CAAuB;AACvB,gDAAwB;AACxB,2CAA6B;AAE7B,iDAAmC;AACnC,uCAA4C;AAC5C,mDAA2C;AAC3C,6CAA+B;AAE/B,0BAAU,CAAC,aAAI,CAAC,CAAC;AAEjB,aAAI,CAAC,8BAA8B,EAAE,KAAK,EAAC,CAAC,EAAC,EAAE;IAE7C,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAC,MAAM,EAAC,EAAE;QACnC,MAAM,QAAQ,GAAG,CAAC,UAAU,EAAE,UAAU,CAAC,CAAC;QAE1C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACxC,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC;YAE5B,cAAI,CAAC,qBAAqB,CAAC;iBACxB,GAAG,CAAC,2BAA2B,OAAO,uBAAuB,CAAC;iBAC9D,aAAa,CAAC,GAAG,EAAE,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,uCAAuC,CAAC,CAAC,CAAC;YAErF,MAAM,MAAM,CAAC,WAAW,CACtB,8CAA8C,OAAO,uBAAuB,EAC5E,OAAO,EACP,4BAA4B,EAC5B,MAAM,EACN,MAAM,EACN,QAAQ,EACR,yBAAe,EAAE,CAAC,CAAC;YAErB,CAAC,CAAC,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,QAAQ,EAAE,SAAS,OAAO,EAAE,CAAC,CAAC,CAAC;SACxD;QAED,MAAM,cAAc,GAAG,SAAS,CAAC,eAAe,CAAC,QAAQ,CAAC,CAAC;QAE3D,CAAC,CAAC,EAAE,CAAC,cAAc,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;IACjC,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,iCAAiC,EAAE,CAAC,CAAC,EAAE;IAE1C,MAAM,KAAK,GAAG;QACZ,UAAU,EAAE,gBAAgB;QAC5B,YAAY,EAAE,kBAAkB;QAChC,cAAc,EAAE,cAAc;QAC9B,OAAO,EAAE,OAAO;QAChB,aAAa,EAAE,aAAa;QAC5B,cAAc,EAAE,cAAc;KAC/B,CAAC;IAEF,KAAK,MAAM,CAAC,OAAO,EAAE,eAAe,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE;QAC9D,MAAM,GAAG,GAAG,wCAAwC,OAAO,MAAM,CAAC;QAElE,IAAI;YACF,MAAM,aAAa,GAAG,MAAM,CAAC,mBAAmB,CAAC,GAAG,EAAE,yBAAe,EAAE,CAAC,CAAC;YACzE,CAAC,CAAC,SAAS,CAAC,aAAa,EAAE,eAAe,CAAC,CAAC;SAC7C;QAAC,OAAO,CAAC,EAAE;YACV,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;SACnB;KACF;AACH,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,0CAA0C,EAAE,CAAC,CAAC,EAAE;IACnD,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC;IAEzD,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC,EAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAC,EAAE,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC;IAEtE,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC,EAAC,GAAG,EAAE,EAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAC,EAAC,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC;AACtF,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,qCAAqC,EAAE,CAAC,CAAC,EAAE;IAC9C,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC,EAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAC,EAAE,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC;AACxE,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,wDAAwD,EAAE,CAAC,CAAC,EAAE;IACjE,IAAI,EAAE,GAAG,EAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,EAAC,CAAC;IAChC,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,EAAE,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC,CAAC;IAEnE,IAAI,EAAE,GAAG,EAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,EAAC,CAAC;IAChC,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC,EAAE,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC;IAEpE,IAAI,EAAE,GAAG,EAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,EAAC,EAAC,CAAC;IACnD,IAAI,CAAC,GAAG,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC;IACvB,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,EAAE,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC,CAAC;AACrE,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,wCAAwC,EAAE,CAAC,CAAC,EAAE;IACjD,CAAC,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,eAAe,CAAC,EAAC,GAAG,EAAE,EAAE,EAAC,EAAE,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;IAE/D,CAAC,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,eAAe,CAAC,EAAC,GAAG,EAAE,EAAE,EAAC,EAAE,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;IAE/D,CAAC,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,eAAe,CAAC,EAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE,EAAE,GAAG,EAAE,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,EAAC,EAAC,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;AACtG,CAAC,CAAC,CAAC"}
\ No newline at end of file
+{"version":3,"file":"codeql.test.js","sourceRoot":"","sources":["../src/codeql.test.ts"],"names":[],"mappings":";;;;;;;;;;;;AAAA,+DAAiD;AACjD,8CAAuB;AACvB,gDAAwB;AACxB,2CAA6B;AAE7B,iDAAmC;AACnC,uCAA4C;AAC5C,mDAA2C;AAC3C,6CAA+B;AAE/B,0BAAU,CAAC,aAAI,CAAC,CAAC;AAEjB,aAAI,CAAC,8BAA8B,EAAE,KAAK,EAAC,CAAC,EAAC,EAAE;IAE7C,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAC,MAAM,EAAC,EAAE;QACnC,MAAM,QAAQ,GAAG,CAAC,UAAU,EAAE,UAAU,CAAC,CAAC;QAE1C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACxC,MAAM,OAAO,GAAG,QAAQ,CAAC,CAAC,CAAC,CAAC;YAE5B,cAAI,CAAC,qBAAqB,CAAC;iBACxB,GAAG,CAAC,2BAA2B,OAAO,uBAAuB,CAAC;iBAC9D,aAAa,CAAC,GAAG,EAAE,IAAI,CAAC,IAAI,CAAC,SAAS,EAAE,uCAAuC,CAAC,CAAC,CAAC;YAErF,MAAM,MAAM,CAAC,WAAW,CACtB,8CAA8C,OAAO,uBAAuB,EAC5E,OAAO,EACP,4BAA4B,EAC5B,MAAM,EACN,MAAM,EACN,QAAQ,EACR,yBAAe,CAAC,IAAI,CAAC,CAAC,CAAC;YAEzB,CAAC,CAAC,MAAM,CAAC,SAAS,CAAC,IAAI,CAAC,QAAQ,EAAE,SAAS,OAAO,EAAE,CAAC,CAAC,CAAC;SACxD;QAED,MAAM,cAAc,GAAG,SAAS,CAAC,eAAe,CAAC,QAAQ,CAAC,CAAC;QAE3D,CAAC,CAAC,EAAE,CAAC,cAAc,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;IACjC,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,iCAAiC,EAAE,CAAC,CAAC,EAAE;IAE1C,MAAM,KAAK,GAAG;QACZ,UAAU,EAAE,gBAAgB;QAC5B,YAAY,EAAE,kBAAkB;QAChC,cAAc,EAAE,cAAc;QAC9B,OAAO,EAAE,OAAO;QAChB,aAAa,EAAE,aAAa;QAC5B,cAAc,EAAE,cAAc;KAC/B,CAAC;IAEF,KAAK,MAAM,CAAC,OAAO,EAAE,eAAe,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE;QAC9D,MAAM,GAAG,GAAG,wCAAwC,OAAO,MAAM,CAAC;QAElE,IAAI;YACF,MAAM,aAAa,GAAG,MAAM,CAAC,mBAAmB,CAAC,GAAG,EAAE,yBAAe,CAAC,IAAI,CAAC,CAAC,CAAC;YAC7E,CAAC,CAAC,SAAS,CAAC,aAAa,EAAE,eAAe,CAAC,CAAC;SAC7C;QAAC,OAAO,CAAC,EAAE;YACV,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;SACnB;KACF;AACH,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,0CAA0C,EAAE,CAAC,CAAC,EAAE;IACnD,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,CAAC;IAEzD,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC,EAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAC,EAAE,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC;IAEtE,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC,EAAC,GAAG,EAAE,EAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAC,EAAC,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC;AACtF,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,qCAAqC,EAAE,CAAC,CAAC,EAAE;IAC9C,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC,EAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAC,EAAE,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC;AACxE,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,wDAAwD,EAAE,CAAC,CAAC,EAAE;IACjE,IAAI,EAAE,GAAG,EAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,EAAC,CAAC;IAChC,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC,EAAE,EAAE,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,EAAE,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC,CAAC;IAEnE,IAAI,EAAE,GAAG,EAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,EAAC,CAAC;IAChC,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC,EAAE,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,CAAC;IAEpE,IAAI,EAAE,GAAG,EAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,EAAC,EAAC,CAAC;IACnD,IAAI,CAAC,GAAG,CAAC,KAAK,EAAE,KAAK,CAAC,CAAC;IACvB,CAAC,CAAC,SAAS,CAAC,MAAM,CAAC,eAAe,CAAC,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC,EAAE,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,CAAC,CAAC,CAAC;AACrE,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,wCAAwC,EAAE,CAAC,CAAC,EAAE;IACjD,CAAC,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,eAAe,CAAC,EAAC,GAAG,EAAE,EAAE,EAAC,EAAE,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;IAE/D,CAAC,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,eAAe,CAAC,EAAC,GAAG,EAAE,EAAE,EAAC,EAAE,CAAC,KAAK,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;IAE/D,CAAC,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,MAAM,CAAC,eAAe,CAAC,EAAC,GAAG,EAAE,CAAC,EAAE,CAAC,EAAE,GAAG,EAAE,EAAE,GAAG,EAAE,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC,EAAC,EAAC,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC;AACtG,CAAC,CAAC,CAAC"}
\ No newline at end of file
diff --git a/lib/config-utils.test.js b/lib/config-utils.test.js
index 43249944d..d62f8295a 100644
--- a/lib/config-utils.test.js
+++ b/lib/config-utils.test.js
@@ -47,7 +47,7 @@ function mockListLanguages(languages) {
 }
 ava_1.default("load empty config", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        const logger = logging_1.getRunnerLogger();
+        const logger = logging_1.getRunnerLogger(true);
         const languages = 'javascript,python';
         const codeQL = codeql_1.setCodeQL({
             resolveQueries: async function () {
@@ -64,7 +64,7 @@ ava_1.default("load empty config", async (t) => {
 });
 ava_1.default("loading config saves config", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        const logger = logging_1.getRunnerLogger();
+        const logger = logging_1.getRunnerLogger(true);
         const codeQL = codeql_1.setCodeQL({
             resolveQueries: async function () {
                 return {
@@ -89,7 +89,7 @@ ava_1.default("loading config saves config", async (t) => {
 ava_1.default("load input outside of workspace", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
         try {
-            await configUtils.initConfig(undefined, undefined, '../input', { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+            await configUtils.initConfig(undefined, undefined, '../input', { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
             throw new Error('initConfig did not throw error');
         }
         catch (err) {
@@ -102,7 +102,7 @@ ava_1.default("load non-local input with invalid repo syntax", async (t) => {
         // no filename given, just a repo
         const configFile = 'octo-org/codeql-config@main';
         try {
-            await configUtils.initConfig(undefined, undefined, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+            await configUtils.initConfig(undefined, undefined, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
             throw new Error('initConfig did not throw error');
         }
         catch (err) {
@@ -116,7 +116,7 @@ ava_1.default("load non-existent input", async (t) => {
         const configFile = 'input';
         t.false(fs.existsSync(path.join(tmpDir, configFile)));
         try {
-            await configUtils.initConfig(languages, undefined, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+            await configUtils.initConfig(languages, undefined, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
             throw new Error('initConfig did not throw error');
         }
         catch (err) {
@@ -172,7 +172,7 @@ ava_1.default("load non-empty input", async (t) => {
         const languages = 'javascript';
         const configFile = 'input';
         fs.writeFileSync(path.join(tmpDir, configFile), inputFileContents, 'utf8');
-        const actualConfig = await configUtils.initConfig(languages, undefined, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+        const actualConfig = await configUtils.initConfig(languages, undefined, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
         // Should exactly equal the object we constructed earlier
         t.deepEqual(actualConfig, expectedConfig);
     });
@@ -209,7 +209,7 @@ ava_1.default("default queries are used", async (t) => {
         const languages = 'javascript';
         const configFile = 'input';
         fs.writeFileSync(path.join(tmpDir, configFile), inputFileContents, 'utf8');
-        await configUtils.initConfig(languages, undefined, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+        await configUtils.initConfig(languages, undefined, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
         // Check resolve queries was called correctly
         t.deepEqual(resolveQueriesArgs.length, 1);
         t.deepEqual(resolveQueriesArgs[0].queries, ['javascript-code-scanning.qls']);
@@ -244,7 +244,7 @@ ava_1.default("Queries can be specified in config file", async (t) => {
             },
         });
         const languages = 'javascript';
-        const config = await configUtils.initConfig(languages, undefined, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+        const config = await configUtils.initConfig(languages, undefined, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
         // Check resolveQueries was called correctly
         // It'll be called once for the default queries
         // and once for `./foo` from the config file.
@@ -288,7 +288,7 @@ ava_1.default("Queries from config file can be overridden in workflow file", asy
             },
         });
         const languages = 'javascript';
-        const config = await configUtils.initConfig(languages, queries, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+        const config = await configUtils.initConfig(languages, queries, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
         // Check resolveQueries was called correctly
         // It'll be called once for the default queries and once for `./override`,
         // but won't be called for './foo' from the config file.
@@ -325,7 +325,7 @@ ava_1.default("Multiple queries can be specified in workflow file, no config fil
             },
         });
         const languages = 'javascript';
-        const config = await configUtils.initConfig(languages, queries, undefined, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+        const config = await configUtils.initConfig(languages, queries, undefined, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
         // Check resolveQueries was called correctly:
         // It'll be called once for the default queries,
         // and then once for each of the two queries from the workflow
@@ -359,7 +359,7 @@ ava_1.default("Invalid queries in workflow file handled correctly", async (t) =>
             },
         });
         try {
-            await configUtils.initConfig(languages, queries, undefined, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+            await configUtils.initConfig(languages, queries, undefined, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
             t.fail('initConfig did not throw error');
         }
         catch (err) {
@@ -402,7 +402,7 @@ ava_1.default("API client used when reading remote config", async (t) => {
         fs.mkdirSync(path.join(tmpDir, 'foo/bar/dev'), { recursive: true });
         const configFile = 'octo-org/codeql-config/config.yaml@main';
         const languages = 'javascript';
-        await configUtils.initConfig(languages, undefined, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+        await configUtils.initConfig(languages, undefined, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
         t.assert(spyGetContents.called);
     });
 });
@@ -412,7 +412,7 @@ ava_1.default("Remote config handles the case where a directory is provided", as
         mockGetContents(dummyResponse);
         const repoReference = 'octo-org/codeql-config/config.yaml@main';
         try {
-            await configUtils.initConfig(undefined, undefined, repoReference, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+            await configUtils.initConfig(undefined, undefined, repoReference, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
             throw new Error('initConfig did not throw error');
         }
         catch (err) {
@@ -428,7 +428,7 @@ ava_1.default("Invalid format of remote config handled correctly", async (t) =>
         mockGetContents(dummyResponse);
         const repoReference = 'octo-org/codeql-config/config.yaml@main';
         try {
-            await configUtils.initConfig(undefined, undefined, repoReference, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+            await configUtils.initConfig(undefined, undefined, repoReference, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
             throw new Error('initConfig did not throw error');
         }
         catch (err) {
@@ -440,7 +440,7 @@ ava_1.default("No detected languages", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
         mockListLanguages([]);
         try {
-            await configUtils.initConfig(undefined, undefined, undefined, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+            await configUtils.initConfig(undefined, undefined, undefined, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
             throw new Error('initConfig did not throw error');
         }
         catch (err) {
@@ -452,7 +452,7 @@ ava_1.default("Unknown languages", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
         const languages = 'ruby,english';
         try {
-            await configUtils.initConfig(languages, undefined, undefined, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+            await configUtils.initConfig(languages, undefined, undefined, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeql_1.getCachedCodeQL(), tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
             throw new Error('initConfig did not throw error');
         }
         catch (err) {
@@ -477,7 +477,7 @@ function doInvalidInputTest(testName, inputFileContents, expectedErrorMessageGen
             const inputFile = path.join(tmpDir, configFile);
             fs.writeFileSync(inputFile, inputFileContents, 'utf8');
             try {
-                await configUtils.initConfig(languages, undefined, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger());
+                await configUtils.initConfig(languages, undefined, configFile, { owner: 'github', repo: 'example ' }, tmpDir, tmpDir, codeQL, tmpDir, 'token', 'https://github.example.com', logging_1.getRunnerLogger(true));
                 throw new Error('initConfig did not throw error');
             }
             catch (err) {
@@ -537,10 +537,10 @@ ava_1.default('path validations', t => {
     const propertyName = 'paths';
     const configFile = './.github/codeql/config.yml';
     for (const path of validPaths) {
-        t.truthy(configUtils.validateAndSanitisePath(path, propertyName, configFile, logging_1.getRunnerLogger()));
+        t.truthy(configUtils.validateAndSanitisePath(path, propertyName, configFile, logging_1.getRunnerLogger(true)));
     }
     for (const path of invalidPaths) {
-        t.throws(() => configUtils.validateAndSanitisePath(path, propertyName, configFile, logging_1.getRunnerLogger()));
+        t.throws(() => configUtils.validateAndSanitisePath(path, propertyName, configFile, logging_1.getRunnerLogger(true)));
     }
 });
 ava_1.default('path sanitisation', t => {
@@ -548,8 +548,8 @@ ava_1.default('path sanitisation', t => {
     const propertyName = 'paths';
     const configFile = './.github/codeql/config.yml';
     // Valid paths are not modified
-    t.deepEqual(configUtils.validateAndSanitisePath('foo/bar', propertyName, configFile, logging_1.getRunnerLogger()), 'foo/bar');
+    t.deepEqual(configUtils.validateAndSanitisePath('foo/bar', propertyName, configFile, logging_1.getRunnerLogger(true)), 'foo/bar');
     // Trailing stars are stripped
-    t.deepEqual(configUtils.validateAndSanitisePath('foo/**', propertyName, configFile, logging_1.getRunnerLogger()), 'foo/');
+    t.deepEqual(configUtils.validateAndSanitisePath('foo/**', propertyName, configFile, logging_1.getRunnerLogger(true)), 'foo/');
 });
 //# sourceMappingURL=config-utils.test.js.map
\ No newline at end of file
diff --git a/lib/config-utils.test.js.map b/lib/config-utils.test.js.map
index d8c7b3843..2808302c2 100644
--- a/lib/config-utils.test.js.map
+++ b/lib/config-utils.test.js.map
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\ No newline at end of file
diff --git a/lib/fingerprints.test.js b/lib/fingerprints.test.js
index fd2a5d3ff..e9203e538 100644
--- a/lib/fingerprints.test.js
+++ b/lib/fingerprints.test.js
@@ -99,7 +99,7 @@ ava_1.default('hash', (t) => {
 function testResolveUriToFile(uri, index, artifactsURIs) {
     const location = { "uri": uri, "index": index };
     const artifacts = artifactsURIs.map(uri => ({ "location": { "uri": uri } }));
-    return fingerprints.resolveUriToFile(location, artifacts, process.cwd(), logging_1.getRunnerLogger());
+    return fingerprints.resolveUriToFile(location, artifacts, process.cwd(), logging_1.getRunnerLogger(true));
 }
 ava_1.default('resolveUriToFile', t => {
     // The resolveUriToFile method checks that the file exists and is in the right directory
@@ -143,7 +143,7 @@ ava_1.default('addFingerprints', t => {
     expected = JSON.stringify(JSON.parse(expected));
     // The URIs in the SARIF files resolve to files in the testdata directory
     const checkoutPath = path.normalize(__dirname + '/../src/testdata');
-    t.deepEqual(fingerprints.addFingerprints(input, checkoutPath, logging_1.getRunnerLogger()), expected);
+    t.deepEqual(fingerprints.addFingerprints(input, checkoutPath, logging_1.getRunnerLogger(true)), expected);
 });
 ava_1.default('missingRegions', t => {
     // Run an end-to-end test on a test file
@@ -154,6 +154,6 @@ ava_1.default('missingRegions', t => {
     expected = JSON.stringify(JSON.parse(expected));
     // The URIs in the SARIF files resolve to files in the testdata directory
     const checkoutPath = path.normalize(__dirname + '/../src/testdata');
-    t.deepEqual(fingerprints.addFingerprints(input, checkoutPath, logging_1.getRunnerLogger()), expected);
+    t.deepEqual(fingerprints.addFingerprints(input, checkoutPath, logging_1.getRunnerLogger(true)), expected);
 });
 //# sourceMappingURL=fingerprints.test.js.map
\ No newline at end of file
diff --git a/lib/fingerprints.test.js.map b/lib/fingerprints.test.js.map
index f9b22ec20..4581b299a 100644
--- a/lib/fingerprints.test.js.map
+++ b/lib/fingerprints.test.js.map
@@ -1 +1 @@
-{"version":3,"file":"fingerprints.test.js","sourceRoot":"","sources":["../src/fingerprints.test.ts"],"names":[],"mappings":";;;;;;;;;;;;AAAA,8CAAuB;AAEvB,uCAAyB;AACzB,2CAA6B;AAE7B,6DAA+C;AAC/C,uCAA4C;AAC5C,mDAA2C;AAE3C,0BAAU,CAAC,aAAI,CAAC,CAAC;AAEjB,SAAS,QAAQ,CAAC,CAAiB,EAAE,KAAa,EAAE,cAAwB;IAC1E,IAAI,KAAK,GAAG,CAAC,CAAC;IACd,IAAI,QAAQ,GAAG,UAAU,UAAkB,EAAE,IAAY;QACvD,CAAC,CAAC,EAAE,CAAC,UAAU,EAAE,KAAK,GAAG,CAAC,CAAC,CAAC;QAC5B,CAAC,CAAC,EAAE,CAAC,IAAI,EAAE,cAAc,CAAC,KAAK,CAAC,CAAC,CAAC;QAClC,KAAK,EAAE,CAAC;IACV,CAAC,CAAC;IACF,YAAY,CAAC,IAAI,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;IACnC,CAAC,CAAC,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,MAAM,CAAC,CAAC;AAChD,CAAC;AAED,aAAI,CAAC,MAAM,EAAE,CAAC,CAAiB,EAAE,EAAE;IACjC,iBAAiB;IACjB,QAAQ,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,oBAAoB,CAAC,CAAC,CAAC;IAExC,iDAAiD;IACjD,QAAQ,CACN,CAAC,EACD,oBAAoB,EACpB;QACE,oBAAoB;QACpB,mBAAmB;QACnB,mBAAmB;QACnB,oBAAoB;KACrB,CAAC,CAAC;IACL,QAAQ,CACN,CAAC,EACD,iDAAiD,EACjD;QACE,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,mBAAmB;KACpB,CAAC,CAAC;IACL,QAAQ,CACN,CAAC,EACD,mDAAmD,EACnD;QACE,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;KACrB,CAAC,CAAC;IACL,QAAQ,CACN,CAAC,EACD,mDAAmD,EACnD;QACE,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;KACrB,CAAC,CAAC;IACL,QAAQ,CACN,CAAC,EACD,+DAA+D,EAC/D;QACE,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;KACrB,CAAC,CAAC;IACL,QAAQ,CACN,CAAC,EACD,uDAAuD,EACvD;QACE,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;KACrB,CAAC,CAAC;IAEL,yDAAyD;IACzD,QAAQ,CACN,CAAC,EACD,+BAA+B,CAAC,MAAM,CAAC,EAAE,CAAC,EAC1C;QACE,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;KACrB,CAAC,CAAC;AACP,CAAC,CAAC,CAAC;AAEH,SAAS,oBAAoB,CAAC,GAAQ,EAAE,KAAU,EAAE,aAAoB;IACtE,MAAM,QAAQ,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC;IAChD,MAAM,SAAS,GAAG,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,EAAE,UAAU,EAAE,EAAE,KAAK,EAAE,GAAG,EAAE,EAAE,CAAC,CAAC,CAAC;IAC7E,OAAO,YAAY,CAAC,gBAAgB,CAAC,QAAQ,EAAE,SAAS,EAAE,OAAO,CAAC,GAAG,EAAE,EAAE,yBAAe,EAAE,CAAC,CAAC;AAC9F,CAAC;AAED,aAAI,CAAC,kBAAkB,EAAE,CAAC,CAAC,EAAE;IAC3B,wFAAwF;IACxF,oFAAoF;IACpF,qFAAqF;IACrF,uDAAuD;IACvD,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC;IAC1B,MAAM,QAAQ,GAAG,UAAU,CAAC;IAC5B,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC;IACvC,MAAM,gBAAgB,GAAG,QAAQ,CAAC,SAAS,CAAC,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IAE5D,gCAAgC;IAChC,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,QAAQ,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC;IAC9D,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,SAAS,GAAG,QAAQ,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC;IAE1E,mCAAmC;IACnC,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,gBAAgB,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC;IACtE,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,SAAS,GAAG,gBAAgB,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC;IAElF,oDAAoD;IACpD,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,iBAAiB,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;IACxE,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,wBAAwB,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;IAE/E,8BAA8B;IAC9B,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,UAAU,GAAG,QAAQ,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;IAC5E,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,QAAQ,GAAG,QAAQ,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;IAE1E,6BAA6B;IAC7B,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,CAAC,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;IACxD,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,SAAS,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;IAEhE,mCAAmC;IACnC,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,QAAQ,GAAG,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;IAErE,oBAAoB;IACpB,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,SAAS,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC;IAC/D,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,SAAS,EAAE,CAAC,EAAE,CAAC,KAAK,EAAE,QAAQ,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC;IAEtE,gCAAgC;IAChC,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,SAAS,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC,EAAE,SAAS,CAAC,CAAC;IAChE,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,SAAS,EAAE,GAAG,EAAE,CAAC,QAAQ,CAAC,CAAC,EAAE,SAAS,CAAC,CAAC;AACpE,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,iBAAiB,EAAE,CAAC,CAAC,EAAE;IAC1B,wCAAwC;IACxC,IAAI,KAAK,GAAG,EAAE,CAAC,YAAY,CAAC,SAAS,GAAG,6CAA6C,CAAC,CAAC,QAAQ,EAAE,CAAC;IAClG,IAAI,QAAQ,GAAG,EAAE,CAAC,YAAY,CAAC,SAAS,GAAG,gDAAgD,CAAC,CAAC,QAAQ,EAAE,CAAC;IAExG,mFAAmF;IACnF,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC;IAC1C,QAAQ,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC;IAEhD,yEAAyE;IACzE,MAAM,YAAY,GAAG,IAAI,CAAC,SAAS,CAAC,SAAS,GAAG,kBAAkB,CAAC,CAAC;IAEpE,CAAC,CAAC,SAAS,CAAC,YAAY,CAAC,eAAe,CAAC,KAAK,EAAE,YAAY,EAAE,yBAAe,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC;AAC9F,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,gBAAgB,EAAE,CAAC,CAAC,EAAE;IACzB,wCAAwC;IACxC,IAAI,KAAK,GAAG,EAAE,CAAC,YAAY,CAAC,SAAS,GAAG,8CAA8C,CAAC,CAAC,QAAQ,EAAE,CAAC;IACnG,IAAI,QAAQ,GAAG,EAAE,CAAC,YAAY,CAAC,SAAS,GAAG,iDAAiD,CAAC,CAAC,QAAQ,EAAE,CAAC;IAEzG,mFAAmF;IACnF,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC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\ No newline at end of file
+{"version":3,"file":"fingerprints.test.js","sourceRoot":"","sources":["../src/fingerprints.test.ts"],"names":[],"mappings":";;;;;;;;;;;;AAAA,8CAAuB;AAEvB,uCAAyB;AACzB,2CAA6B;AAE7B,6DAA+C;AAC/C,uCAA4C;AAC5C,mDAA2C;AAE3C,0BAAU,CAAC,aAAI,CAAC,CAAC;AAEjB,SAAS,QAAQ,CAAC,CAAiB,EAAE,KAAa,EAAE,cAAwB;IAC1E,IAAI,KAAK,GAAG,CAAC,CAAC;IACd,IAAI,QAAQ,GAAG,UAAU,UAAkB,EAAE,IAAY;QACvD,CAAC,CAAC,EAAE,CAAC,UAAU,EAAE,KAAK,GAAG,CAAC,CAAC,CAAC;QAC5B,CAAC,CAAC,EAAE,CAAC,IAAI,EAAE,cAAc,CAAC,KAAK,CAAC,CAAC,CAAC;QAClC,KAAK,EAAE,CAAC;IACV,CAAC,CAAC;IACF,YAAY,CAAC,IAAI,CAAC,QAAQ,EAAE,KAAK,CAAC,CAAC;IACnC,CAAC,CAAC,EAAE,CAAC,KAAK,EAAE,KAAK,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC,MAAM,CAAC,CAAC;AAChD,CAAC;AAED,aAAI,CAAC,MAAM,EAAE,CAAC,CAAiB,EAAE,EAAE;IACjC,iBAAiB;IACjB,QAAQ,CAAC,CAAC,EAAE,EAAE,EAAE,CAAC,oBAAoB,CAAC,CAAC,CAAC;IAExC,iDAAiD;IACjD,QAAQ,CACN,CAAC,EACD,oBAAoB,EACpB;QACE,oBAAoB;QACpB,mBAAmB;QACnB,mBAAmB;QACnB,oBAAoB;KACrB,CAAC,CAAC;IACL,QAAQ,CACN,CAAC,EACD,iDAAiD,EACjD;QACE,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,mBAAmB;KACpB,CAAC,CAAC;IACL,QAAQ,CACN,CAAC,EACD,mDAAmD,EACnD;QACE,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;KACrB,CAAC,CAAC;IACL,QAAQ,CACN,CAAC,EACD,mDAAmD,EACnD;QACE,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;KACrB,CAAC,CAAC;IACL,QAAQ,CACN,CAAC,EACD,+DAA+D,EAC/D;QACE,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;KACrB,CAAC,CAAC;IACL,QAAQ,CACN,CAAC,EACD,uDAAuD,EACvD;QACE,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;KACrB,CAAC,CAAC;IAEL,yDAAyD;IACzD,QAAQ,CACN,CAAC,EACD,+BAA+B,CAAC,MAAM,CAAC,EAAE,CAAC,EAC1C;QACE,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;QACpB,oBAAoB;KACrB,CAAC,CAAC;AACP,CAAC,CAAC,CAAC;AAEH,SAAS,oBAAoB,CAAC,GAAQ,EAAE,KAAU,EAAE,aAAoB;IACtE,MAAM,QAAQ,GAAG,EAAE,KAAK,EAAE,GAAG,EAAE,OAAO,EAAE,KAAK,EAAE,CAAC;IAChD,MAAM,SAAS,GAAG,aAAa,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,EAAE,UAAU,EAAE,EAAE,KAAK,EAAE,GAAG,EAAE,EAAE,CAAC,CAAC,CAAC;IAC7E,OAAO,YAAY,CAAC,gBAAgB,CAAC,QAAQ,EAAE,SAAS,EAAE,OAAO,CAAC,GAAG,EAAE,EAAE,yBAAe,CAAC,IAAI,CAAC,CAAC,CAAC;AAClG,CAAC;AAED,aAAI,CAAC,kBAAkB,EAAE,CAAC,CAAC,EAAE;IAC3B,wFAAwF;IACxF,oFAAoF;IACpF,qFAAqF;IACrF,uDAAuD;IACvD,MAAM,GAAG,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC;IAC1B,MAAM,QAAQ,GAAG,UAAU,CAAC;IAC5B,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,GAAG,GAAG,GAAG,CAAC,CAAC,CAAC;IACvC,MAAM,gBAAgB,GAAG,QAAQ,CAAC,SAAS,CAAC,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IAE5D,gCAAgC;IAChC,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,QAAQ,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC;IAC9D,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,SAAS,GAAG,QAAQ,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC;IAE1E,mCAAmC;IACnC,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,gBAAgB,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC;IACtE,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,SAAS,GAAG,gBAAgB,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC;IAElF,oDAAoD;IACpD,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,iBAAiB,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;IACxE,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,wBAAwB,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;IAE/E,8BAA8B;IAC9B,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,UAAU,GAAG,QAAQ,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;IAC5E,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,QAAQ,GAAG,QAAQ,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;IAE1E,6BAA6B;IAC7B,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,CAAC,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;IACxD,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,SAAS,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;IAEhE,mCAAmC;IACnC,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,QAAQ,GAAG,GAAG,EAAE,SAAS,EAAE,EAAE,CAAC,EAAE,SAAS,CAAC,CAAC;IAErE,oBAAoB;IACpB,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,SAAS,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC;IAC/D,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,SAAS,EAAE,CAAC,EAAE,CAAC,KAAK,EAAE,QAAQ,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC;IAEtE,gCAAgC;IAChC,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,SAAS,EAAE,CAAC,EAAE,CAAC,QAAQ,CAAC,CAAC,EAAE,SAAS,CAAC,CAAC;IAChE,CAAC,CAAC,EAAE,CAAC,oBAAoB,CAAC,SAAS,EAAE,GAAG,EAAE,CAAC,QAAQ,CAAC,CAAC,EAAE,SAAS,CAAC,CAAC;AACpE,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,iBAAiB,EAAE,CAAC,CAAC,EAAE;IAC1B,wCAAwC;IACxC,IAAI,KAAK,GAAG,EAAE,CAAC,YAAY,CAAC,SAAS,GAAG,6CAA6C,CAAC,CAAC,QAAQ,EAAE,CAAC;IAClG,IAAI,QAAQ,GAAG,EAAE,CAAC,YAAY,CAAC,SAAS,GAAG,gDAAgD,CAAC,CAAC,QAAQ,EAAE,CAAC;IAExG,mFAAmF;IACnF,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC;IAC1C,QAAQ,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,QAAQ,CAAC,CAAC,CAAC;IAEhD,yEAAyE;IACzE,MAAM,YAAY,GAAG,IAAI,CAAC,SAAS,CAAC,SAAS,GAAG,kBAAkB,CAAC,CAAC;IAEpE,CAAC,CAAC,SAAS,CAAC,YAAY,CAAC,eAAe,CAAC,KAAK,EAAE,YAAY,EAAE,yBAAe,CAAC,IAAI,CAAC,CAAC,EAAE,QAAQ,CAAC,CAAC;AAClG,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,gBAAgB,EAAE,CAAC,CAAC,EAAE;IACzB,wCAAwC;IACxC,IAAI,KAAK,GAAG,EAAE,CAAC,YAAY,CAAC,SAAS,GAAG,8CAA8C,CAAC,CAAC,QAAQ,EAAE,CAAC;IACnG,IAAI,QAAQ,GAAG,EAAE,CAAC,YAAY,CAAC,SAAS,GAAG,iDAAiD,CAAC,CAAC,QAAQ,EAAE,CAAC;IAEzG,mFAAmF;IACnF,KAAK,GAAG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC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\ No newline at end of file
diff --git a/lib/logging.js b/lib/logging.js
index 8bbba26e1..65d45c11d 100644
--- a/lib/logging.js
+++ b/lib/logging.js
@@ -12,9 +12,9 @@ function getActionsLogger() {
     return core;
 }
 exports.getActionsLogger = getActionsLogger;
-function getRunnerLogger() {
+function getRunnerLogger(debugMode) {
     return {
-        debug: console.debug,
+        debug: debugMode ? console.debug : () => undefined,
         info: console.info,
         warning: console.warn,
         error: console.error,
diff --git a/lib/logging.js.map b/lib/logging.js.map
index 1bb7c6e41..23284aba0 100644
--- a/lib/logging.js.map
+++ b/lib/logging.js.map
@@ -1 +1 @@
-{"version":3,"file":"logging.js","sourceRoot":"","sources":["../src/logging.ts"],"names":[],"mappings":";;;;;;;;;AAAA,oDAAsC;AAYtC,SAAgB,gBAAgB;IAC9B,OAAO,IAAI,CAAC;AACd,CAAC;AAFD,4CAEC;AAED,SAAgB,eAAe;IAC7B,OAAO;QACL,KAAK,EAAE,OAAO,CAAC,KAAK;QACpB,IAAI,EAAE,OAAO,CAAC,IAAI;QAClB,OAAO,EAAE,OAAO,CAAC,IAAI;QACrB,KAAK,EAAE,OAAO,CAAC,KAAK;QACpB,UAAU,EAAE,GAAG,EAAE,CAAC,SAAS;QAC3B,QAAQ,EAAE,GAAG,EAAE,CAAC,SAAS;KAC1B,CAAC;AACJ,CAAC;AATD,0CASC"}
\ No newline at end of file
+{"version":3,"file":"logging.js","sourceRoot":"","sources":["../src/logging.ts"],"names":[],"mappings":";;;;;;;;;AAAA,oDAAsC;AAYtC,SAAgB,gBAAgB;IAC9B,OAAO,IAAI,CAAC;AACd,CAAC;AAFD,4CAEC;AAED,SAAgB,eAAe,CAAC,SAAkB;IAChD,OAAO;QACL,KAAK,EAAE,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,SAAS;QAClD,IAAI,EAAE,OAAO,CAAC,IAAI;QAClB,OAAO,EAAE,OAAO,CAAC,IAAI;QACrB,KAAK,EAAE,OAAO,CAAC,KAAK;QACpB,UAAU,EAAE,GAAG,EAAE,CAAC,SAAS;QAC3B,QAAQ,EAAE,GAAG,EAAE,CAAC,SAAS;KAC1B,CAAC;AACJ,CAAC;AATD,0CASC"}
\ No newline at end of file
diff --git a/lib/runner.js b/lib/runner.js
index 516cea083..387953457 100644
--- a/lib/runner.js
+++ b/lib/runner.js
@@ -67,7 +67,6 @@ function checkEnvironmentSetup(config) {
             "See end out output from 'init' command for instructions.");
     }
 }
-const logger = logging_1.getRunnerLogger();
 program
     .command('init')
     .description('Initializes CodeQL')
@@ -81,7 +80,9 @@ program
     .option('--temp-dir <dir>', 'Directory to use for temporary files. By default will use current working directory.')
     .option('--tools-dir <dir>', 'Directory to use for CodeQL tools and other files to store between runs. By default will use home directory.')
     .option('--checkout-path <path>', 'Checkout path (default: current working directory)')
+    .option('--debug', 'Print more verbose output', false)
     .action(async (cmd) => {
+    const logger = logging_1.getRunnerLogger(cmd.debug);
     try {
         const tempDir = getTempDir(cmd.tempDir);
         const toolsDir = getToolsDir(cmd.toolsDir);
@@ -139,7 +140,9 @@ program
     .description('Attempts to automatically build code')
     .option('--language <language>', 'The language to build. By default will try to detect the dominant language.')
     .option('--temp-dir <dir>', 'Directory to use for temporary files. By default will use current working directory.')
+    .option('--debug', 'Print more verbose output', false)
     .action(async (cmd) => {
+    const logger = logging_1.getRunnerLogger(cmd.debug);
     try {
         const config = await config_utils_1.getConfig(getTempDir(cmd.tempDir), logger);
         checkEnvironmentSetup(config);
@@ -176,7 +179,9 @@ program
     .option('--no-upload', 'Do not upload results after analysis', false)
     .option('--output-dir <dir>', 'Directory to output SARIF files to. By default will use temp directory.')
     .option('--temp-dir <dir>', 'Directory to use for temporary files. By default will use current working directory.')
+    .option('--debug', 'Print more verbose output', false)
     .action(async (cmd) => {
+    const logger = logging_1.getRunnerLogger(cmd.debug);
     try {
         const tempDir = getTempDir(cmd.tempDir);
         const outputDir = cmd.outputDir || path.join(tempDir, 'codeql-sarif');
@@ -200,7 +205,9 @@ program
     .requiredOption('--github-url <url>', 'URL of GitHub instance')
     .requiredOption('--github-auth <auth>', 'GitHub Apps token, or of the form "username:token" if using a personal access token')
     .option('--checkout-path <path>', 'Checkout path (default: current working directory)')
+    .option('--debug', 'Print more verbose output', false)
     .action(async (cmd) => {
+    const logger = logging_1.getRunnerLogger(cmd.debug);
     try {
         await upload_lib.upload(cmd.sarifFile, repository_1.parseRepositoryNwo(cmd.repository), cmd.commit, cmd.ref, undefined, undefined, undefined, cmd.checkoutPath || process.cwd(), undefined, cmd.githubAuth, parseGithubUrl(cmd.githubUrl), 'runner', logger);
     }
diff --git a/lib/runner.js.map b/lib/runner.js.map
index 04b5f3e00..fa0a25b7f 100644
--- a/lib/runner.js.map
+++ b/lib/runner.js.map
@@ -1 +1 @@
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\ No newline at end of file
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\ No newline at end of file
diff --git a/lib/upload-lib.test.js b/lib/upload-lib.test.js
index 95bff48e5..7be97bc20 100644
--- a/lib/upload-lib.test.js
+++ b/lib/upload-lib.test.js
@@ -17,10 +17,10 @@ const uploadLib = __importStar(require("./upload-lib"));
 testing_utils_1.setupTests(ava_1.default);
 ava_1.default('validateSarifFileSchema - valid', t => {
     const inputFile = __dirname + '/../src/testdata/valid-sarif.sarif';
-    t.notThrows(() => uploadLib.validateSarifFileSchema(inputFile, logging_1.getRunnerLogger()));
+    t.notThrows(() => uploadLib.validateSarifFileSchema(inputFile, logging_1.getRunnerLogger(true)));
 });
 ava_1.default('validateSarifFileSchema - invalid', t => {
     const inputFile = __dirname + '/../src/testdata/invalid-sarif.sarif';
-    t.throws(() => uploadLib.validateSarifFileSchema(inputFile, logging_1.getRunnerLogger()));
+    t.throws(() => uploadLib.validateSarifFileSchema(inputFile, logging_1.getRunnerLogger(true)));
 });
 //# sourceMappingURL=upload-lib.test.js.map
\ No newline at end of file
diff --git a/lib/upload-lib.test.js.map b/lib/upload-lib.test.js.map
index f799cf904..c2158326b 100644
--- a/lib/upload-lib.test.js.map
+++ b/lib/upload-lib.test.js.map
@@ -1 +1 @@
-{"version":3,"file":"upload-lib.test.js","sourceRoot":"","sources":["../src/upload-lib.test.ts"],"names":[],"mappings":";;;;;;;;;;;;AAAA,8CAAuB;AAEvB,uCAA4C;AAC5C,mDAA2C;AAC3C,wDAA0C;AAE1C,0BAAU,CAAC,aAAI,CAAC,CAAC;AAEjB,aAAI,CAAC,iCAAiC,EAAE,CAAC,CAAC,EAAE;IAC1C,MAAM,SAAS,GAAG,SAAS,GAAG,oCAAoC,CAAC;IACnE,CAAC,CAAC,SAAS,CAAC,GAAG,EAAE,CAAC,SAAS,CAAC,uBAAuB,CAAC,SAAS,EAAE,yBAAe,EAAE,CAAC,CAAC,CAAC;AACrF,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,mCAAmC,EAAE,CAAC,CAAC,EAAE;IAC5C,MAAM,SAAS,GAAG,SAAS,GAAG,sCAAsC,CAAC;IACrE,CAAC,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,SAAS,CAAC,uBAAuB,CAAC,SAAS,EAAE,yBAAe,EAAE,CAAC,CAAC,CAAC;AAClF,CAAC,CAAC,CAAC"}
\ No newline at end of file
+{"version":3,"file":"upload-lib.test.js","sourceRoot":"","sources":["../src/upload-lib.test.ts"],"names":[],"mappings":";;;;;;;;;;;;AAAA,8CAAuB;AAEvB,uCAA4C;AAC5C,mDAA2C;AAC3C,wDAA0C;AAE1C,0BAAU,CAAC,aAAI,CAAC,CAAC;AAEjB,aAAI,CAAC,iCAAiC,EAAE,CAAC,CAAC,EAAE;IAC1C,MAAM,SAAS,GAAG,SAAS,GAAG,oCAAoC,CAAC;IACnE,CAAC,CAAC,SAAS,CAAC,GAAG,EAAE,CAAC,SAAS,CAAC,uBAAuB,CAAC,SAAS,EAAE,yBAAe,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AACzF,CAAC,CAAC,CAAC;AAEH,aAAI,CAAC,mCAAmC,EAAE,CAAC,CAAC,EAAE;IAC5C,MAAM,SAAS,GAAG,SAAS,GAAG,sCAAsC,CAAC;IACrE,CAAC,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC,SAAS,CAAC,uBAAuB,CAAC,SAAS,EAAE,yBAAe,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;AACtF,CAAC,CAAC,CAAC"}
\ No newline at end of file
diff --git a/src/codeql.test.ts b/src/codeql.test.ts
index 20a4d2d37..e832eb90f 100644
--- a/src/codeql.test.ts
+++ b/src/codeql.test.ts
@@ -29,7 +29,7 @@ test('download codeql bundle cache', async t => {
         tmpDir,
         tmpDir,
         'runner',
-        getRunnerLogger());
+        getRunnerLogger(true));
 
       t.assert(toolcache.find('CodeQL', `0.0.0-${version}`));
     }
@@ -55,7 +55,7 @@ test('parse codeql bundle url version', t => {
     const url = `https://github.com/.../codeql-bundle-${version}/...`;
 
     try {
-      const parsedVersion = codeql.getCodeQLURLVersion(url, getRunnerLogger());
+      const parsedVersion = codeql.getCodeQLURLVersion(url, getRunnerLogger(true));
       t.deepEqual(parsedVersion, expectedVersion);
     } catch (e) {
       t.fail(e.message);
diff --git a/src/config-utils.test.ts b/src/config-utils.test.ts
index 9c925f8ae..50ca37985 100644
--- a/src/config-utils.test.ts
+++ b/src/config-utils.test.ts
@@ -42,7 +42,7 @@ function mockListLanguages(languages: string[]) {
 
 test("load empty config", async t => {
   return await util.withTmpDir(async tmpDir => {
-    const logger = getRunnerLogger();
+    const logger = getRunnerLogger(true);
     const languages = 'javascript,python';
 
     const codeQL = setCodeQL({
@@ -84,7 +84,7 @@ test("load empty config", async t => {
 
 test("loading config saves config", async t => {
   return await util.withTmpDir(async tmpDir => {
-    const logger = getRunnerLogger();
+    const logger = getRunnerLogger(true);
 
     const codeQL = setCodeQL({
       resolveQueries: async function() {
@@ -139,7 +139,7 @@ test("load input outside of workspace", async t => {
         tmpDir,
         'token',
         'https://github.example.com',
-        getRunnerLogger());
+        getRunnerLogger(true));
       throw new Error('initConfig did not throw error');
     } catch (err) {
       t.deepEqual(err, new Error(configUtils.getConfigFileOutsideWorkspaceErrorMessage(path.join(tmpDir, '../input'))));
@@ -164,7 +164,7 @@ test("load non-local input with invalid repo syntax", async t => {
         tmpDir,
         'token',
         'https://github.example.com',
-        getRunnerLogger());
+        getRunnerLogger(true));
       throw new Error('initConfig did not throw error');
     } catch (err) {
       t.deepEqual(err, new Error(configUtils.getConfigFileRepoFormatInvalidMessage('octo-org/codeql-config@main')));
@@ -190,7 +190,7 @@ test("load non-existent input", async t => {
         tmpDir,
         'token',
         'https://github.example.com',
-        getRunnerLogger());
+        getRunnerLogger(true));
       throw new Error('initConfig did not throw error');
     } catch (err) {
       t.deepEqual(err, new Error(configUtils.getConfigFileDoesNotExistErrorMessage(path.join(tmpDir, 'input'))));
@@ -262,7 +262,7 @@ test("load non-empty input", async t => {
       tmpDir,
       'token',
       'https://github.example.com',
-      getRunnerLogger());
+      getRunnerLogger(true));
 
     // Should exactly equal the object we constructed earlier
     t.deepEqual(actualConfig, expectedConfig);
@@ -317,7 +317,7 @@ test("default queries are used", async t => {
       tmpDir,
       'token',
       'https://github.example.com',
-      getRunnerLogger());
+      getRunnerLogger(true));
 
     // Check resolve queries was called correctly
     t.deepEqual(resolveQueriesArgs.length, 1);
@@ -370,7 +370,7 @@ test("Queries can be specified in config file", async t => {
       tmpDir,
       'token',
       'https://github.example.com',
-      getRunnerLogger());
+      getRunnerLogger(true));
 
     // Check resolveQueries was called correctly
     // It'll be called once for the default queries
@@ -434,7 +434,7 @@ test("Queries from config file can be overridden in workflow file", async t => {
       tmpDir,
       'token',
       'https://github.example.com',
-      getRunnerLogger());
+      getRunnerLogger(true));
 
     // Check resolveQueries was called correctly
     // It'll be called once for the default queries and once for `./override`,
@@ -489,7 +489,7 @@ test("Multiple queries can be specified in workflow file, no config file require
       tmpDir,
       'token',
       'https://github.example.com',
-      getRunnerLogger());
+      getRunnerLogger(true));
 
     // Check resolveQueries was called correctly:
     // It'll be called once for the default queries,
@@ -539,7 +539,7 @@ test("Invalid queries in workflow file handled correctly", async t => {
         tmpDir,
         'token',
         'https://github.example.com',
-        getRunnerLogger());
+        getRunnerLogger(true));
       t.fail('initConfig did not throw error');
     } catch (err) {
       t.deepEqual(err, new Error(configUtils.getQueryUsesInvalid(undefined, "foo/bar@v1@v3")));
@@ -597,7 +597,7 @@ test("API client used when reading remote config", async t => {
       tmpDir,
       'token',
       'https://github.example.com',
-      getRunnerLogger());
+      getRunnerLogger(true));
     t.assert(spyGetContents.called);
   });
 });
@@ -620,7 +620,7 @@ test("Remote config handles the case where a directory is provided", async t =>
         tmpDir,
         'token',
         'https://github.example.com',
-        getRunnerLogger());
+        getRunnerLogger(true));
       throw new Error('initConfig did not throw error');
     } catch (err) {
       t.deepEqual(err, new Error(configUtils.getConfigFileDirectoryGivenMessage(repoReference)));
@@ -648,7 +648,7 @@ test("Invalid format of remote config handled correctly", async t => {
         tmpDir,
         'token',
         'https://github.example.com',
-        getRunnerLogger());
+        getRunnerLogger(true));
       throw new Error('initConfig did not throw error');
     } catch (err) {
       t.deepEqual(err, new Error(configUtils.getConfigFileFormatInvalidMessage(repoReference)));
@@ -672,7 +672,7 @@ test("No detected languages", async t => {
         tmpDir,
         'token',
         'https://github.example.com',
-        getRunnerLogger());
+        getRunnerLogger(true));
       throw new Error('initConfig did not throw error');
     } catch (err) {
       t.deepEqual(err, new Error(configUtils.getNoLanguagesError()));
@@ -696,7 +696,7 @@ test("Unknown languages", async t => {
         tmpDir,
         'token',
         'https://github.example.com',
-        getRunnerLogger());
+        getRunnerLogger(true));
       throw new Error('initConfig did not throw error');
     } catch (err) {
       t.deepEqual(err, new Error(configUtils.getUnknownLanguagesError(['ruby', 'english'])));
@@ -738,7 +738,7 @@ function doInvalidInputTest(
           tmpDir,
           'token',
           'https://github.example.com',
-          getRunnerLogger());
+          getRunnerLogger(true));
         throw new Error('initConfig did not throw error');
       } catch (err) {
         t.deepEqual(err, new Error(expectedErrorMessageGenerator(inputFile)));
@@ -846,10 +846,10 @@ test('path validations', t => {
   const configFile = './.github/codeql/config.yml';
 
   for (const path of validPaths) {
-    t.truthy(configUtils.validateAndSanitisePath(path, propertyName, configFile, getRunnerLogger()));
+    t.truthy(configUtils.validateAndSanitisePath(path, propertyName, configFile, getRunnerLogger(true)));
   }
   for (const path of invalidPaths) {
-    t.throws(() => configUtils.validateAndSanitisePath(path, propertyName, configFile, getRunnerLogger()));
+    t.throws(() => configUtils.validateAndSanitisePath(path, propertyName, configFile, getRunnerLogger(true)));
   }
 });
 
@@ -860,11 +860,11 @@ test('path sanitisation', t => {
 
   // Valid paths are not modified
   t.deepEqual(
-    configUtils.validateAndSanitisePath('foo/bar', propertyName, configFile, getRunnerLogger()),
+    configUtils.validateAndSanitisePath('foo/bar', propertyName, configFile, getRunnerLogger(true)),
     'foo/bar');
 
   // Trailing stars are stripped
   t.deepEqual(
-    configUtils.validateAndSanitisePath('foo/**', propertyName, configFile, getRunnerLogger()),
+    configUtils.validateAndSanitisePath('foo/**', propertyName, configFile, getRunnerLogger(true)),
     'foo/');
 });
diff --git a/src/fingerprints.test.ts b/src/fingerprints.test.ts
index d708467f4..aee473ee1 100644
--- a/src/fingerprints.test.ts
+++ b/src/fingerprints.test.ts
@@ -116,7 +116,7 @@ test('hash', (t: ava.Assertions) => {
 function testResolveUriToFile(uri: any, index: any, artifactsURIs: any[]) {
   const location = { "uri": uri, "index": index };
   const artifacts = artifactsURIs.map(uri => ({ "location": { "uri": uri } }));
-  return fingerprints.resolveUriToFile(location, artifacts, process.cwd(), getRunnerLogger());
+  return fingerprints.resolveUriToFile(location, artifacts, process.cwd(), getRunnerLogger(true));
 }
 
 test('resolveUriToFile', t => {
@@ -173,7 +173,7 @@ test('addFingerprints', t => {
   // The URIs in the SARIF files resolve to files in the testdata directory
   const checkoutPath = path.normalize(__dirname + '/../src/testdata');
 
-  t.deepEqual(fingerprints.addFingerprints(input, checkoutPath, getRunnerLogger()), expected);
+  t.deepEqual(fingerprints.addFingerprints(input, checkoutPath, getRunnerLogger(true)), expected);
 });
 
 test('missingRegions', t => {
@@ -188,5 +188,5 @@ test('missingRegions', t => {
   // The URIs in the SARIF files resolve to files in the testdata directory
   const checkoutPath = path.normalize(__dirname + '/../src/testdata');
 
-  t.deepEqual(fingerprints.addFingerprints(input, checkoutPath, getRunnerLogger()), expected);
+  t.deepEqual(fingerprints.addFingerprints(input, checkoutPath, getRunnerLogger(true)), expected);
 });
diff --git a/src/logging.ts b/src/logging.ts
index fe93dfd45..a30aa7487 100644
--- a/src/logging.ts
+++ b/src/logging.ts
@@ -14,9 +14,9 @@ export function getActionsLogger(): Logger {
   return core;
 }
 
-export function getRunnerLogger(): Logger {
+export function getRunnerLogger(debugMode: boolean): Logger {
   return {
-    debug: console.debug,
+    debug: debugMode ? console.debug : () => undefined,
     info: console.info,
     warning: console.warn,
     error: console.error,
diff --git a/src/runner.ts b/src/runner.ts
index f378090ef..a1f6c2912 100644
--- a/src/runner.ts
+++ b/src/runner.ts
@@ -65,8 +65,6 @@ function checkEnvironmentSetup(config: Config) {
   }
 }
 
-const logger = getRunnerLogger();
-
 interface InitArgs {
   languages: string | undefined;
   queries: string | undefined;
@@ -78,6 +76,7 @@ interface InitArgs {
   repository: string;
   githubUrl: string;
   githubAuth: string;
+  debug: boolean;
 }
 
 program
@@ -93,7 +92,9 @@ program
   .option('--temp-dir <dir>', 'Directory to use for temporary files. By default will use current working directory.')
   .option('--tools-dir <dir>', 'Directory to use for CodeQL tools and other files to store between runs. By default will use home directory.')
   .option('--checkout-path <path>', 'Checkout path (default: current working directory)')
+  .option('--debug', 'Print more verbose output', false)
   .action(async (cmd: InitArgs) => {
+    const logger = getRunnerLogger(cmd.debug);
     try {
       const tempDir = getTempDir(cmd.tempDir);
       const toolsDir = getToolsDir(cmd.toolsDir);
@@ -174,6 +175,7 @@ program
 interface AutobuildArgs {
   language: string;
   tempDir: string | undefined;
+  debug: boolean;
 }
 
 program
@@ -181,7 +183,9 @@ program
   .description('Attempts to automatically build code')
   .option('--language <language>', 'The language to build. By default will try to detect the dominant language.')
   .option('--temp-dir <dir>', 'Directory to use for temporary files. By default will use current working directory.')
+  .option('--debug', 'Print more verbose output', false)
   .action(async (cmd: AutobuildArgs) => {
+    const logger = getRunnerLogger(cmd.debug);
     try {
       const config = await getConfig(getTempDir(cmd.tempDir), logger);
       checkEnvironmentSetup(config);
@@ -215,6 +219,7 @@ interface AnalyzeArgs {
   upload: boolean;
   outputDir: string | undefined;
   tempDir: string | undefined;
+  debug: boolean;
 }
 
 program
@@ -229,7 +234,9 @@ program
   .option('--no-upload', 'Do not upload results after analysis', false)
   .option('--output-dir <dir>', 'Directory to output SARIF files to. By default will use temp directory.')
   .option('--temp-dir <dir>', 'Directory to use for temporary files. By default will use current working directory.')
+  .option('--debug', 'Print more verbose output', false)
   .action(async (cmd: AnalyzeArgs) => {
+    const logger = getRunnerLogger(cmd.debug);
     try {
       const tempDir = getTempDir(cmd.tempDir);
       const outputDir = cmd.outputDir || path.join(tempDir, 'codeql-sarif');
@@ -266,6 +273,7 @@ interface UploadArgs {
   githubUrl: string;
   githubAuth: string;
   checkoutPath: string | undefined;
+  debug: boolean;
 }
 
 program
@@ -278,7 +286,9 @@ program
   .requiredOption('--github-url <url>', 'URL of GitHub instance')
   .requiredOption('--github-auth <auth>', 'GitHub Apps token, or of the form "username:token" if using a personal access token')
   .option('--checkout-path <path>', 'Checkout path (default: current working directory)')
+  .option('--debug', 'Print more verbose output', false)
   .action(async (cmd: UploadArgs) => {
+    const logger = getRunnerLogger(cmd.debug);
     try {
       await upload_lib.upload(
         cmd.sarifFile,
diff --git a/src/upload-lib.test.ts b/src/upload-lib.test.ts
index 36bbd31d3..aacd4e11a 100644
--- a/src/upload-lib.test.ts
+++ b/src/upload-lib.test.ts
@@ -8,10 +8,10 @@ setupTests(test);
 
 test('validateSarifFileSchema - valid', t => {
   const inputFile = __dirname + '/../src/testdata/valid-sarif.sarif';
-  t.notThrows(() => uploadLib.validateSarifFileSchema(inputFile, getRunnerLogger()));
+  t.notThrows(() => uploadLib.validateSarifFileSchema(inputFile, getRunnerLogger(true)));
 });
 
 test('validateSarifFileSchema - invalid', t => {
   const inputFile = __dirname + '/../src/testdata/invalid-sarif.sarif';
-  t.throws(() => uploadLib.validateSarifFileSchema(inputFile, getRunnerLogger()));
+  t.throws(() => uploadLib.validateSarifFileSchema(inputFile, getRunnerLogger(true)));
 });