Start running ATM queries again

lib/analysis-paths.test.js

@@ -45,6 +45,7 @@ const util = __importStar(require("./util"));
             debugMode: false,
             debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
             debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
+            injectedMlQueries: false,
         };
         analysisPaths.includeAndExcludeAnalysisPaths(config);
         t.is(process.env["LGTM_INDEX_INCLUDE"], undefined);
@@ -69,6 +70,7 @@ const util = __importStar(require("./util"));
             debugMode: false,
             debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
             debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
+            injectedMlQueries: false,
         };
         analysisPaths.includeAndExcludeAnalysisPaths(config);
         t.is(process.env["LGTM_INDEX_INCLUDE"], "path1\npath2");
@@ -94,6 +96,7 @@ const util = __importStar(require("./util"));
             debugMode: false,
             debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
             debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
+            injectedMlQueries: false,
         };
         analysisPaths.includeAndExcludeAnalysisPaths(config);
         t.is(process.env["LGTM_INDEX_INCLUDE"], undefined);

lib/analysis-paths.test.js.map

@@ -1 +1 @@
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+{"version":3,"file":"analysis-paths.test.js","sourceRoot":"","sources":["../src/analysis-paths.test.ts"],"names":[],"mappings":";;;;;;;;;;;;;;;;;;;;;;;;AAAA,2CAA6B;AAE7B,8CAAuB;AAEvB,gEAAkD;AAClD,mDAA6C;AAC7C,6CAA+B;AAE/B,IAAA,0BAAU,EAAC,aAAI,CAAC,CAAC;AAEjB,IAAA,aAAI,EAAC,YAAY,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAC7B,OAAO,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QAC5C,MAAM,MAAM,GAAG;YACb,SAAS,EAAE,EAAE;YACb,OAAO,EAAE,EAAE;YACX,WAAW,EAAE,EAAE;YACf,KAAK,EAAE,EAAE;YACT,iBAAiB,EAAE,EAAE;YACrB,OAAO,EAAE,MAAM;YACf,YAAY,EAAE,MAAM;YACpB,SAAS,EAAE,EAAE;YACb,aAAa,EAAE,EAAE,IAAI,EAAE,IAAI,CAAC,aAAa,CAAC,MAAM,EAAwB;YACxE,UAAU,EAAE,IAAI,CAAC,OAAO,CAAC,MAAM,EAAE,kBAAkB,CAAC;YACpD,KAAK,EAAE,EAAE;YACT,SAAS,EAAE,KAAK;YAChB,iBAAiB,EAAE,IAAI,CAAC,2BAA2B;YACnD,iBAAiB,EAAE,IAAI,CAAC,2BAA2B;YACnD,iBAAiB,EAAE,KAAK;SACzB,CAAC;QACF,aAAa,CAAC,8BAA8B,CAAC,MAAM,CAAC,CAAC;QACrD,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,SAAS,CAAC,CAAC;QACnD,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,SAAS,CAAC,CAAC;QACnD,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,SAAS,CAAC,CAAC;IACrD,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,eAAe,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IAChC,OAAO,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,EAAE;QAC5C,MAAM,MAAM,GAAG;YACb,SAAS,EAAE,EAAE;YACb,OAAO,EAAE,EAAE;YACX,KAAK,EAAE,CAAC,OAAO,EAAE,OAAO,EAAE,UAAU,CAAC;YACrC,WAAW,EAAE,CAAC,OAAO,EAAE,OAAO,EAAE,UAAU,CAAC;YAC3C,iBAAiB,EAAE,EAAE;YACrB,OAAO,EAAE,MAAM;YACf,YAAY,EAAE,MAAM;YACpB,SAAS,EAAE,EAAE;YACb,aAAa,EAAE,EAAE,IAAI,EAAE,IAAI,CAAC,aAAa,CAAC,MAAM,EAAwB;YACxE,UAAU,EAAE,IAAI,CAAC,OAAO,CAAC,MAAM,EAAE,kBAAkB,CAAC;YACpD,KAAK,EAAE,EAAE;YACT,SAAS,EAAE,KAAK;YAChB,iBAAiB,EAAE,IAAI,CAAC,2BAA2B;YACnD,iBAAiB,EAAE,IAAI,CAAC,2BAA2B;YACnD,iBAAiB,EAAE,KAAK;SACzB,CAAC;QACF,aAAa,CAAC,8BAA8B,CAAC,MAAM,CAAC,CAAC;QACrD,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,cAAc,CAAC,CAAC;QACxD,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,cAAc,CAAC,CAAC;QACxD,CAAC,CAAC,EAAE,CACF,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EACjC,gGAAgG,CACjG,CAAC;IACJ,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC;AAEH,IAAA,aAAI,EAAC,kBAAkB,EAAE,KAAK,EAAE,CAAC,EAAE,EAAE;IACnC,OAAO,MAAM,IAAI,CAAC,UAAU,CAAC,KAAK,EAAE,YAAY,EAAE,EAAE;QAClD,MAAM,OAAO,GAAG,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,oBAAoB,CAAC,CAAC;QAC/D,MAAM,MAAM,GAAG;YACb,SAAS,EAAE,EAAE;YACb,OAAO,EAAE,EAAE;YACX,WAAW,EAAE,EAAE;YACf,KAAK,EAAE,EAAE;YACT,iBAAiB,EAAE,EAAE;YACrB,OAAO;YACP,YAAY;YACZ,SAAS,EAAE,EAAE;YACb,aAAa,EAAE,EAAE,IAAI,EAAE,IAAI,CAAC,aAAa,CAAC,MAAM,EAAwB;YACxE,UAAU,EAAE,IAAI,CAAC,OAAO,CAAC,OAAO,EAAE,kBAAkB,CAAC;YACrD,KAAK,EAAE,EAAE;YACT,SAAS,EAAE,KAAK;YAChB,iBAAiB,EAAE,IAAI,CAAC,2BAA2B;YACnD,iBAAiB,EAAE,IAAI,CAAC,2BAA2B;YACnD,iBAAiB,EAAE,KAAK;SACzB,CAAC;QACF,aAAa,CAAC,8BAA8B,CAAC,MAAM,CAAC,CAAC;QACrD,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,SAAS,CAAC,CAAC;QACnD,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,oBAAoB,CAAC,CAAC;QAC9D,CAAC,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,oBAAoB,CAAC,EAAE,SAAS,CAAC,CAAC;IACrD,CAAC,CAAC,CAAC;AACL,CAAC,CAAC,CAAC"}

lib/analyze.test.js

@@ -128,6 +128,7 @@ const util = __importStar(require("./util"));
                 debugMode: false,
                 debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
                 debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
+                injectedMlQueries: false,
             };
             fs.mkdirSync(util.getCodeQLDatabasePath(config, language), {
                 recursive: true,

lib/codeql.js

@@ -470,7 +470,25 @@ async function getCodeQLForCmd(cmd, checkVersion) {
             }
             if (await util.codeQlVersionAbove(codeql, exports.CODEQL_VERSION_CONFIG_FILES)) {
                 const configLocation = path.resolve(config.tempDir, "user-config.yaml");
-                fs.writeFileSync(configLocation, yaml.dump(config.originalUserInput));
+                const augmentedConfig = config.originalUserInput;
+                if (config.injectedMlQueries) {
+                    // We need to inject the ML queries into the original user input before
+                    // we pass this on to the CLI, to make sure these get run.
+                    let packString = util_1.ML_POWERED_JS_QUERIES_PACK.packName;
+                    if (util_1.ML_POWERED_JS_QUERIES_PACK.version)
+                        packString = `${packString}@${util_1.ML_POWERED_JS_QUERIES_PACK.version}`;
+                    if (augmentedConfig.packs === undefined)
+                        augmentedConfig.packs = [];
+                    if (Array.isArray(augmentedConfig.packs)) {
+                        augmentedConfig.packs.push(packString);
+                    }
+                    else {
+                        if (!augmentedConfig.packs.javascript)
+                            augmentedConfig.packs["javascript"] = [];
+                        augmentedConfig.packs["javascript"].push(packString);
+                    }
+                }
+                fs.writeFileSync(configLocation, yaml.dump(augmentedConfig));
                 extraArgs.push(`--codescanning-config=${configLocation}`);
             }
             await runTool(cmd, [

lib/config-utils.js

@@ -118,9 +118,11 @@ const builtinSuites = ["security-extended", "security-and-quality"];
 /**
  * Determine the set of queries associated with suiteName's suites and add them to resultMap.
  * Throws an error if suiteName is not a valid builtin suite.
+ * May inject ML queries, and the return value will declare if this was done.
  */
 async function addBuiltinSuiteQueries(languages, codeQL, resultMap, packs, suiteName, featureFlags, configFile) {
     var _a;
+    let injectedMlQueries = false;
     const found = builtinSuites.find((suite) => suite === suiteName);
     if (!found) {
         throw new Error(getQueryUsesInvalid(configFile, suiteName));
@@ -137,9 +139,11 @@ async function addBuiltinSuiteQueries(languages, codeQL, resultMap, packs, suite
             packs.javascript = [];
         }
         packs.javascript.push(util_1.ML_POWERED_JS_QUERIES_PACK);
+        injectedMlQueries = true;
     }
     const suites = languages.map((l) => `${l}-${suiteName}.qls`);
     await runResolveQueries(codeQL, resultMap, suites, undefined);
+    return injectedMlQueries;
 }
 /**
  * Retrieve the set of queries at localQueryPath and add them to resultMap.
@@ -196,6 +200,11 @@ async function addRemoteQueries(codeQL, resultMap, queryUses, tempDir, apiDetail
  * parsing the 'uses' actions in the workflow file. So it can handle
  * local paths starting with './', or references to remote repos, or
  * a finite set of hardcoded terms for builtin suites.
+ *
+ * This may inject ML queries into the packs to use, and the return value will
+ * declare if this was done.
+ *
+ * @returns whether or not we injected ML queries into the packs
  */
 async function parseQueryUses(languages, codeQL, resultMap, packs, queryUses, tempDir, workspacePath, apiDetails, featureFlags, logger, configFile) {
     queryUses = queryUses.trim();
@@ -205,15 +214,15 @@ async function parseQueryUses(languages, codeQL, resultMap, packs, queryUses, te
     // Check for the local path case before we start trying to parse the repository name
     if (queryUses.startsWith("./")) {
         await addLocalQueries(codeQL, resultMap, queryUses.slice(2), workspacePath, configFile);
-        return;
+        return false;
     }
     // Check for one of the builtin suites
     if (queryUses.indexOf("/") === -1 && queryUses.indexOf("@") === -1) {
-        await addBuiltinSuiteQueries(languages, codeQL, resultMap, packs, queryUses, featureFlags, configFile);
-        return;
+        return await addBuiltinSuiteQueries(languages, codeQL, resultMap, packs, queryUses, featureFlags, configFile);
     }
     // Otherwise, must be a reference to another repo
     await addRemoteQueries(codeQL, resultMap, queryUses, tempDir, apiDetails, logger, configFile);
+    return false;
 }
 // Regex validating stars in paths or paths-ignore entries.
 // The intention is to only allow ** to appear when immediately
@@ -422,12 +431,15 @@ async function getLanguages(codeQL, languagesInput, repository, apiDetails, logg
     return parsedLanguages;
 }
 async function addQueriesAndPacksFromWorkflow(codeQL, queriesInput, languages, resultMap, packs, tempDir, workspacePath, apiDetails, featureFlags, logger) {
+    let injectedMlQueries = false;
     queriesInput = queriesInput.trim();
     // "+" means "don't override config file" - see shouldAddConfigFileQueries
     queriesInput = queriesInput.replace(/^\+/, "");
     for (const query of queriesInput.split(",")) {
-        await parseQueryUses(languages, codeQL, resultMap, packs, query, tempDir, workspacePath, apiDetails, featureFlags, logger);
+        const didInject = await parseQueryUses(languages, codeQL, resultMap, packs, query, tempDir, workspacePath, apiDetails, featureFlags, logger);
+        injectedMlQueries = injectedMlQueries || didInject;
     }
+    return injectedMlQueries;
 }
 // Returns true if either no queries were provided in the workflow.
 // or if the queries in the workflow were provided in "additive" mode,
@@ -454,8 +466,9 @@ async function getDefaultConfig(languagesInput, queriesInput, packsInput, dbLoca
     }
     await addDefaultQueries(codeQL, languages, queries);
     const packs = (_a = parsePacksFromInput(packsInput, languages)) !== null && _a !== void 0 ? _a : {};
+    let injectedMlQueries = false;
     if (queriesInput) {
-        await addQueriesAndPacksFromWorkflow(codeQL, queriesInput, languages, queries, packs, tempDir, workspacePath, apiDetails, featureFlags, logger);
+        injectedMlQueries = await addQueriesAndPacksFromWorkflow(codeQL, queriesInput, languages, queries, packs, tempDir, workspacePath, apiDetails, featureFlags, logger);
     }
     return {
         languages,
@@ -472,6 +485,7 @@ async function getDefaultConfig(languagesInput, queriesInput, packsInput, dbLoca
         debugMode,
         debugArtifactName,
         debugDatabaseName,
+        injectedMlQueries,
     };
 }
 exports.getDefaultConfig = getDefaultConfig;
@@ -524,8 +538,9 @@ async function loadConfig(languagesInput, queriesInput, packsInput, configFile,
     // they should take precedence over the queries in the config file
     // unless they're prefixed with "+", in which case they supplement those
     // in the config file.
+    let injectedMlQueries = false;
     if (queriesInput) {
-        await addQueriesAndPacksFromWorkflow(codeQL, queriesInput, languages, queries, packs, tempDir, workspacePath, apiDetails, featureFlags, logger);
+        injectedMlQueries = await addQueriesAndPacksFromWorkflow(codeQL, queriesInput, languages, queries, packs, tempDir, workspacePath, apiDetails, featureFlags, logger);
     }
     if (shouldAddConfigFileQueries(queriesInput) &&
         QUERIES_PROPERTY in parsedYAML) {
@@ -578,6 +593,7 @@ async function loadConfig(languagesInput, queriesInput, packsInput, configFile,
         debugMode,
         debugArtifactName,
         debugDatabaseName,
+        injectedMlQueries,
     };
 }
 /**

lib/config-utils.test.js

@@ -221,6 +221,7 @@ function mockListLanguages(languages) {
             debugMode: false,
             debugArtifactName: "my-artifact",
             debugDatabaseName: "my-db",
+            injectedMlQueries: false,
         };
         const languages = "javascript";
         const configFilePath = createConfigFile(inputFileContents, tmpDir);

lib/database-upload.test.js

@@ -58,6 +58,7 @@ function getTestConfig(tmpDir) {
         debugMode: false,
         debugArtifactName: util_1.DEFAULT_DEBUG_ARTIFACT_NAME,
         debugDatabaseName: util_1.DEFAULT_DEBUG_DATABASE_NAME,
+        injectedMlQueries: false,
     };
 }
 async function mockHttpRequests(databaseUploadStatusCode) {

lib/tracer-config.test.js

@@ -47,6 +47,7 @@ function getTestConfig(tmpDir) {
         debugMode: false,
         debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
         debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
+        injectedMlQueries: false,
     };
 }
 // A very minimal setup

lib/util.test.js

@@ -257,6 +257,7 @@ for (const [packs, expectedStatus] of ML_POWERED_JS_STATUS_TESTS) {
                 debugMode: false,
                 debugArtifactName: util.DEFAULT_DEBUG_ARTIFACT_NAME,
                 debugDatabaseName: util.DEFAULT_DEBUG_DATABASE_NAME,
+                injectedMlQueries: false,
             };
             t.is(util.getMlPoweredJsQueriesStatus(config), expectedStatus);
         });