Prototyping adding quality queries when running queries

lib/analyze.js

@@ -427,6 +427,14 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
     for (const language of config.languages) {
         try {
             const sarifFile = path.join(sarifFolder, `${language}.sarif`);
+            const queries = [];
+            if (config.augmentationProperties.qualityQueriesInput !== undefined) {
+                queries.push(`path:${config.tempDir}/config-queries.qls`);
+                for (const qualityQuery of config.augmentationProperties
+                    .qualityQueriesInput) {
+                    queries.push(resolveQuerySuiteAlias(language, qualityQuery.uses));
+                }
+            }
             // The work needed to generate the query suites
             // is done in the CLI. We just need to make a single
             // call to run all the queries for each language and
@@ -434,7 +442,7 @@ async function runQueries(sarifFolder, memoryFlag, addSnippetsFlag, threadsFlag,
             logger.startGroup(`Running queries for ${language}`);
             const startTimeRunQueries = new Date().getTime();
             const databasePath = util.getCodeQLDatabasePath(config, language);
-            await codeql.databaseRunQueries(databasePath, queryFlags);
+            await codeql.databaseRunQueries(databasePath, queryFlags, queries);
             logger.debug(`Finished running queries for ${language}.`);
             // TODO should not be using `builtin` here. We should be using `all` instead.
             // The status report does not support `all` yet.

lib/codeql.js

@@ -450,7 +450,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                 throw new Error(`Unexpected output from codeql resolve build-environment: ${e} in\n${output}`);
             }
         },
-        async databaseRunQueries(databasePath, flags) {
+        async databaseRunQueries(databasePath, flags, queries = []) {
             const codeqlArgs = [
                 "database",
                 "run-queries",
@@ -459,6 +459,7 @@ async function getCodeQLForCmd(cmd, checkVersion) {
                 "--intra-layer-parallelism",
                 "--min-disk-free=1024", // Try to leave at least 1GB free
                 "-v",
+                ...queries,
                 ...getExtraOptionsFromEnv(["database", "run-queries"], {
                     ignoringOptions: ["--expect-discarded-cache"],
                 }),
@@ -759,14 +760,12 @@ async function generateCodeScanningConfig(config, logger) {
     // make a copy so we can modify it
     const augmentedConfig = (0, util_1.cloneObject)(config.originalUserInput);
     // Inject the queries from the input
-    if (config.augmentationProperties.queriesInput ||
-        config.augmentationProperties.qualityQueriesInput) {
-        const queryInputs = (config.augmentationProperties.queriesInput || []).concat(config.augmentationProperties.qualityQueriesInput || []);
+    if (config.augmentationProperties.queriesInput) {
         if (config.augmentationProperties.queriesInputCombines) {
-            augmentedConfig.queries = (augmentedConfig.queries || []).concat(queryInputs);
+            augmentedConfig.queries = (augmentedConfig.queries || []).concat(config.augmentationProperties.queriesInput);
         }
         else {
-            augmentedConfig.queries = queryInputs;
+            augmentedConfig.queries = config.augmentationProperties.queriesInput;
         }
     }
     if (augmentedConfig.queries?.length === 0) {