fix after review from @henrymercer

lib/config-utils.js

@@ -936,6 +936,9 @@ async function initConfig(languagesInput, queriesInput, packsInput, registriesIn
     let config;
     // if configInput is set, it takes precedence over configFile
     if (configInput) {
+        if (configFile) {
+            logger.warning(`Both a config file and config input were provided. Ignoring config file.`);
+        }
         configFile = path.resolve(workspacePath, "user-config-from-action.yml");
         fs.writeFileSync(configFile, configInput);
         logger.debug(`Using config from action input: ${configFile}`);

lib/config-utils.test.js

@@ -495,9 +495,9 @@ function queriesToResolvedQueryForm(queries) {
         t.true(config.queries["javascript"].custom[2].queries[0].endsWith(`${path.sep}foo`));
     });
 });
-(0, ava_1.default)("Queries can be specified in configuration, same as file", async (t) => {
+(0, ava_1.default)("Queries can be specified using config input", async (t) => {
     return await util.withTmpDir(async (tmpDir) => {
-        const inputFileContents = `
+        const configInput = `
       name: my config
       queries:
         - uses: ./foo
@@ -520,7 +520,7 @@ function queriesToResolvedQueryForm(queries) {
         });
         // Only JS, python packs will be ignored
         const languages = "javascript";
-        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, undefined, inputFileContents, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
+        const config = await configUtils.initConfig(languages, undefined, undefined, undefined, undefined, undefined, configInput, false, false, "", "", { owner: "github", repo: "example " }, tmpDir, codeQL, tmpDir, gitHubVersion, sampleApiDetails, (0, testing_utils_1.createFeatures)([]), (0, logging_1.getRunnerLogger)(true));
         // Check resolveQueries was called correctly
         // It'll be called once for the default queries
         // and once for `./foo` from the config file.