fix after review from @henrymercer

src/config-utils.test.ts

@@ -925,9 +925,9 @@ test("Queries in workflow file can be added to the set of queries without overri
   });
 });
 
-test("Queries can be specified in configuration, same as file", async (t) => {
+test("Queries can be specified using config input", async (t) => {
   return await util.withTmpDir(async (tmpDir) => {
-    const inputFileContents = `
+    const configInput = `
       name: my config
       queries:
         - uses: ./foo
@@ -967,7 +967,7 @@ test("Queries can be specified in configuration, same as file", async (t) => {
       undefined,
       undefined,
       undefined,
-      inputFileContents,
+      configInput,
       false,
       false,
       "",

src/config-utils.ts

@@ -1708,6 +1708,11 @@ export async function initConfig(
 
   // if configInput is set, it takes precedence over configFile
   if (configInput) {
+    if (configFile) {
+      logger.warning(
+        `Both a config file and config input were provided. Ignoring config file.`
+      );
+    }
     configFile = path.resolve(workspacePath, "user-config-from-action.yml");
     fs.writeFileSync(configFile, configInput);
     logger.debug(`Using config from action input: ${configFile}`);